PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G253100.1
Common NameB456_001G253100, LOC105771796
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 219aa    MW: 24736.6 Da    PI: 4.8514
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G253100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.6e-1986136255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +g+++AeIrd + ng  +r++lg+f++ae Aa a+++a+ +++g
  Gorai.001G253100.1  86 SYRGVRKRP-WGKFAAEIRDSTRNG--ARVWLGTFDSAEAAALAYDQAAFSMRG 136
                         69*******.**********44465..*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.99E-2085145No hitNo description
PfamPF008476.9E-1486136IPR001471AP2/ERF domain
SMARTSM003801.6E-3786150IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2286146IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-3086144IPR001471AP2/ERF domain
PROSITE profilePS5103222.89386144IPR001471AP2/ERF domain
PRINTSPR003672.6E-108798IPR001471AP2/ERF domain
PRINTSPR003672.6E-10110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEESWLFQYS NNPELSRFGS AEQFSSGCEW DELLLNFNNP DETVWSDLLG DEEERRKASS  60
ESNNTSIDGG VKEEEVCSEE PKKVKSYRGV RKRPWGKFAA EIRDSTRNGA RVWLGTFDSA  120
EAAALAYDQA AFSMRGPLAT LNFPIETVKE SLQELKHRCD EDKGCSPLVA LKNRYSLRKR  180
SKNKKIKPNA AALRQQQNLL VFEDLGPDFL EQLLSSCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2883147266ATERF1
3gcc_A5e-2883147266ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176184LRKRSKNKK
2178184KRSKNKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448643.11e-160PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC85e-55ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D2M2X41e-160A0A0D2M2X4_G
STRINGPOPTR_0002s04020.12e-58(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2507134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-47ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]